Summary: A new study reveals there is a genetic component to spatial memory in Mountain Chickadees.

Source: Cornell University

For the first time, researchers have shown that there is a genetic component underlying the amazing spatial memories of Mountain Chickadees. These energetic half-ounce birds hide thousands of food items every fall and rely on these hidden stores to get through harsh winters in the mountains of the West.

To find these caches, chickadees use highly specialized spatial memory abilities. Although the genetic basis for spatial memory has been shown for humans and other mammals, direct evidence of that connection has never before been identified in birds.

These findings were just published in the journal Current Biology. The research is a collaboration among scientists from the Cornell Lab of Ornithology, the University of Colorado Boulder, the University of Nevada, Reno, and the University of Oklahoma.

“We all use spatial memory to navigate our environment,” says lead author Carrie Branch at the Cornell Lab of Ornithology. “Without memory there’s no learning and an organism would have to start from scratch for every task. So, it really is life and death for these birds to be able to remember where they stashed their food. We’ve been able to show that natural selection is shaping their ability to remember locations.”

If natural selection (survival of the fittest) is shaping chickadee memory, certain criteria have to be met. There has to be variation in the trait: some chickadees are indeed better than others at re-finding their stores. There has to be a fitness advantage: birds that perform better on a spatial memory task are more likely to survive and produce offspring. Importantly, variation in the trait must have a genetic basis.

“Environment does still matter a lot in terms of shaping behavior, but our work here suggests that genes may create the brain structures, and then experience and learning can build on top of that,” Branch explains.

How do you measure a chickadee’s memory? Senior author Vladimir Pravosudov and his team at the University of Nevada, Reno, designed arrays of “smart” feeders to measure memory in a population of wild Mountain Chickadees in California’s Sierra Nevada mountains. Each feeder is equipped with radio frequency identification sensors.

The 42 birds tested were fitted with leg tags the size of a grain of rice which give off an identifying signal. Each bird was assigned to one of the eight feeders in each array. The feeder sensor reads the bird’s ID tag and if it’s the matching feeder for that individual, a mechanism opens the door, and the bird gets a seed. The scientists then tracked how many tries it took before the birds consistently went to the correct feeder. 

“This is an effective system to test spatial learning and memory in hundreds of wild chickadees in their natural environment,” said Pravosudov. “We have previously shown that even very small variations in performance are associated with differences in survival.”

Mountain Chickadee. Credit: Vladimir Pravosudov, University of Nevada, Reno.
To understand the connection between spatial memory and genetic architecture, co-authors Georgy Semenov and Scott Taylor at the University of Colorado Boulder, sequenced Mountain Chickadee genomes.
“We used two methods to link genetic variation with spatial memory in chickadees,” said Semenov. “In the traditional genome-wide approach, we compared genetic data across individuals, from those that performed well on the spatial learning and memory task to those that performed poorly. We did the same comparison with a new machine learning algorithm. Both methods showed hundreds of differences associated with spatial memory. Many of the variations in the genomes turned up in areas known to be associated with learning, memory, and neuron development in the brain.”

The authors say many questions remain about the influence of spatial memory itself, including what role it may play in the female’s choice of a mate.
This research was supported by grants to the University of Nevada, Reno, and to the University of Colorado Boulder, from the National Science Foundation and by a Rose Postdoctoral Fellowship from the Cornell Lab of Ornithology.

About this memory research news

Author: Patricia Leonard
Source: Cornell University
Contact: Patricia Leonard – Cornell University
Image: The image is credited to Vladimir Pravosudov, University of Nevada, Reno.

Original Research: Open access.
“The genetic basis of spatial cognitive variation in a food-caching bird” by Carrie Branch et al. Current Biology


See also

This shows a brain

The genetic basis of spatial cognitive variation in a food-caching bird


  • Food-caching birds use spatial cognition to recover food stores and survive winter
  • Variation in cognitive phenotypes is associated with variation across the genome
  • Top outlier genes are associated with hippocampal development and function
  • Results link cognitive and genetic variation, making it available for selection


Spatial cognition is used by most organisms to navigate their environment. Some species rely particularly heavily on specialized spatial cognition to survive, suggesting that a heritable component of cognition may be under natural selection. This idea remains largely untested outside of humans, perhaps because cognition in general is known to be strongly affected by learning and experience. 

We investigated the genetic basis of individual variation in spatial cognition used by non-migratory food-caching birds to recover food stores and survive harsh montane winters. Comparing the genomes of wild, free-living birds ranging from best to worst in their performance on a spatial cognitive task revealed significant associations with genes involved in neuron growth and development and hippocampal function.

These results identify candidate genes associated with differences in spatial cognition and provide a critical link connecting individual variation in spatial cognition with natural selection.

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