Summary: The SERPINA5 was strongly correlated with tau tangle progression in the hippocampus and cortex.
Source: Mayo Clinic
In a new paper published in Nature Communications, Mayo Clinic researchers and collaborators report the protein-coding gene SERPINA5 may worsen tau protein tangles, which are characteristic of Alzheimer’s disease, and advance disease. By combining clinical expertise, brain tissue samples, pathology expertise and artificial intelligence, the team clarified and validated the relevance of the gene to Alzheimer’s disease.
The researchers used tissue samples from 385 brains donated to the Mayo Clinic Brain Bank, which houses more than 9,000 brain tissue specimens for the study of neurodegenerative disorders. The samples were from people who were diagnosed with Alzheimer’s disease and lacked co-existing diseases found in the brain. This ensured a spotlight on Alzheimer’s disease, which enabled the team to focus on targets relevant to the disease.
These samples were used to classify the pattern of protein tangles associated with Alzheimer’s. Then the team used digital pathology and RNA sequencing to identify gene expression in the samples, which effectively measures gene changes responsible for instructing proteins.
“We were able to look at an entire disease spectrum and find gene changes that may really influence the hippocampus, the brain’s memory center,” says Melissa Murray, Ph.D., a Mayo Clinic translational neuropathologist and lead author on the paper. “That means we may have targets that indicate why some people have relative preservation and some people have relative exacerbation of memory loss symptoms.”
Using a machine learning algorithm, the authors narrowed the genes of interest from about 50,000 to five. The top candidate, SERPINA5, was found to be strongly associated with tau tangle progression in the hippocampus and cortex of the samples. The researchers plan to investigate how SERPINA5 interacts with tau protein to develop an inhibitor.
“Much of the focus of therapeutics is on abnormal proteins ? amyloid and tau ? used to biologically define Alzheimer’s disease,” says Dr. Murray. “But we hope to take a step back to look at a new interacting partner that may be actually accelerating tau or pushing tau accumulation past the tipping point.”
Based on a growing understanding of how Alzheimer’s disease may affect people at different ages, or differences observed between women and men, the study team did not limit their investigation by adjusting for age and sex.
The team was recently awarded a grant by the state of Florida to ensure the findings are broadly applicable across an ethno-racially diverse Alzheimer’s disease cohort, as the need for more research to clarify the relevance of gene expression changes on hippocampal vulnerability may be critical for preserving memory loss in Alzheimer’s disease.
But, Dr. Murray says, by starting with the human brain and ending with it, the researchers hope their findings provide a deeper level of understanding that helps advance findings to clinical trials faster.
“While we have direct evidence of SERPINA5 in the context of Alzheimer’s disease, SERPINA3 in this same family of genes has also been looked at in Alzheimer’s, and SERPINA1 in ALS. So I think it’s about collective awareness and paying attention to this group of proteins.”
In addition to Dr. Murray, authors affiliated with Mayo are Angela Crist, Ph.D.; Xue Wang, Ph.D.; Christina Moloney, Ph.D.; Billie Matchett; Sydney Labuzan; Zachary Quicksall; Tulsi Patel, Ph.D.; Michael DeTure, Ph.D.; Xiaojia Tang, Ph.D.; Ronald Petersen, M.D., Ph.D.; Neill Graff-Radford, M.D.; Minerva Carrasquillo, Ph.D.; Hu Li, Ph.D.; Owen Ross, Ph.D.; Nilufer Taner, M.D., Ph.D.; Dennis Dickson, M.D.; Yan Asmann, Ph.D.; and Rickey Carter, Ph.D. Author Ranjan Duara, M.D., is affiliated with the Wien Center for Alzheimer’s Disease and Memory Disorders at Mount Sinai Medical Center in Florida.
Funding: Funding for this study was provided by the New Vision Award, National Institute on Aging, the Alzheimer’s Association, Florida Department of Health, the Ed and Ethel Moore Alzheimer’s Disease Research program, and a gift from David and Frances Strawn. For the full author list, disclosure information and a complete list of those who funded the study, see the published paper.
About this Alzheimer’s and genetics research news
Source: Mayo Clinic
Contact: Kevin Punsky – Mayo Clinic
Image: The image is in the public domain
Original Research: Open access.
“Transcriptomic analysis to identify genes associated with selective hippocampal vulnerability in Alzheimer’s disease” by Melissa Murray et al. Nature Communications
Transcriptomic analysis to identify genes associated with selective hippocampal vulnerability in Alzheimer’s disease
Selective vulnerability of different brain regions is seen in many neurodegenerative disorders. The hippocampus and cortex are selectively vulnerable in Alzheimer’s disease (AD), however the degree of involvement of the different brain regions differs among patients.
We classified corticolimbic patterns of neurofibrillary tangles in postmortem tissue to capture extreme and representative phenotypes. We combined bulk RNA sequencing with digital pathology to examine hippocampal vulnerability in AD.
We identified hippocampal gene expression changes associated with hippocampal vulnerability and used machine learning to identify genes that were associated with AD neuropathology, including SERPINA5, RYBP, SLC38A2, FEM1B, and PYDC1. Further histologic and biochemical analyses suggested SERPINA5 expression is associated with tau expression in the brain.
Our study highlights the importance of embracing heterogeneity of the human brain in disease to identify disease-relevant gene expression.